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DIANNeR: label-free RIME resolves lineage-restricted Glucocorticoid Receptor interactomes in normal human tissues
Zhao, W.; Grimes, T. F.; Rose, S. F.; Stenning, J.; Taylor, C.; Baldreki, C.; Goulding, I.; Duke, R.; Baker, S. C.; Montes de Oca, M.; Sinha, A.; Hinley, J.; Fox, J. M.; Kaye, P. M.; Gomm, J. J.; Jones, L. J.; Marangoni, E.; Simoes, B. M.; Clarke, R. B.; Southgate, J.; Bridge, K. S.; Dowle, A.; Holding, A. N.
The glucocorticoid receptor assembles distinct, lineage-restricted protein interactomes across tissues, including a HOXA5-GR interaction present in normal epithelium but undetected in malignant models and an epithelial-restricted SMARCD3-GR interaction with prognostic relevance.
Moderate contradiction
1 prior failureTwo documented clinical failures match this mechanism, or a single Phase 3 failure is on record.
Abstract excerpt
Understanding how transcription factors execute tissue-specific programmes requires defining their protein interaction networks in physiologically relevant contexts. However, profiling normal untransformed cells presents fundamental challenges due to intrinsically limited input material. To meet this challenge we integrated data-independent acquisition (DIA), ion mobility separation, and library-free analysis to achieve a 2-fold increase in detection without loss in enrichment. Applied to the glucocorticoid receptor (GR), a ubiquitously expressed nuclear receptor driving pleiotropic responses to standard-of-care anti-inflammatory therapeutics, DIANNeR (DIA-NN enabled RIME) resolves distinct, context-dependent networks across breast, ureter and blood in normal and transformed contexts. Key findings include: detection of a HOXA5-GR interaction in normal epithelium which was undetected in malignant models; an epithelial-restricted SMARCD3-GR interaction with prognostic relevance; and a FOXP3-BCL11B-GR network in primary CD4+ T cell populations undetected by data dependant acquisition (DDA). By defining normal GR tissue interactomes, DIANNeR provides the essential comparator for interpreting network rewiring that drives disease.
Matching Claidex post-mortems
1 of 1 indexedThis is an automated contradiction flag, not an editorial judgment on the preprint's quality. Flags identify where the preclinical literature and the clinical failure record diverge.

