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Preprint WatchModerateSeptember 2nd, 2026

Defective lysosomal acidification contributes to TNFR1 mediated neuronal necroptosis in Alzheimer's disease

Zeng, J.; Abd-Elraouf, K.; Loi, G. W. Z.; Saipuljumri, E. N.; O'Connor, L. M.; Indajang, J.; Reynolds, R.; Barron, A. M.; Lo, C. H.

Defective lysosomal acidification is a required step downstream of TNFR1 in neuronal necroptosis in Alzheimer's disease, and restoring lysosomal acidification with acidifying nanoparticles rescues the phenotype.

Moderate contradiction

1 prior failure

Two documented clinical failures match this mechanism, or a single Phase 3 failure is on record.

This preprint places defective lysosomal acidification downstream of TNFR1 in neuronal necroptosis, using human post-mortem Alzheimer's brain analysis, cell assays and acidifying nanoparticles to show that restoring lysosomal function interrupts the death pathway. The Claidex record for TNF contains one documented failure, inb03-soluble-tnf-covid19-ards-futility, in which soluble TNF neutralisation failed on futility in COVID-19 acute respiratory distress. The relevance is directional. Both point to the same design question for TNF-axis programs: whether blocking the ligand or the receptor is sufficient when the pathological effect depends on an intracellular step several nodes downstream. If lysosomal acidification is the rate-limiting node, then upstream ligand neutralisation would be expected to underperform, and the intervention that worked here acted on the lysosome and not on TNF. This is preclinical and disease-specific, and it does not transfer directly to critical care indications.

Abstract excerpt

Background: Tumor necrosis factor (TNF) receptor 1 (TNFR1) signaling mediates neuronal necroptosis in Alzheimer's disease (AD). Interaction of TNFR1 signaling axis with autolysosomal pathway and the accumulation of necrosome molecules in impaired lysosomes have been shown to lead to necroptotic neuronal death. This has been attributed to the terminal failure of the autophagic process, primarily due to lysosomal degradation dysfunction. Being the final and determining step of the autolysosomal pathway, lysosomes with sufficient acidification as maintained by functional vacuolar (H+)-ATPase (V-ATPase) are required to achieve complete autophagic degradation of toxic cellular components. Here, we aim to investigate the role of defective lysosomal acidification in mediating TNFR1 induced neuronal necroptosis in AD. Methods: Neuropathological analysis of human post-mortem AD brains was performed to examine the correlation between TNFR1 induced neuronal necroptosis and autolysosomal dysfunction. Specifically, we probed for the level of V-ATPase subunits in AD brains to determine the extent of lysosomal acidification and function. Cell-based assays were conducted to understand the effect of TNFR1 activation in driving lysosomal acidification defect, proteolytic function, membrane integrity, autophagic impairment, mitochondrial dysfunction, and neuronal death in SH-SY5Y neuroblastoma cells. Furthermore, we applied lysosome-acidifying nanoparticles (AcNPs) to determine whether restoration of lysosomal acidification can rescue neuronal necroptosis in both TNF-treated SH-SY5Y cells and APPNL-G-F knock-in mouse model of AD. Results: We found that TNFR1 activated neuronal necroptosis correlated with autolysosomal dysfunction as characterized by downregulation of V-ATPase subunits and accumulation of autophagy receptor p62 in human AD brains. In cell culture, we showed for the first time that lysosomal acidification is only impaired in cells treated with TNF and not with other cytokines, contributing to inhibition of autophagic degradation in SH-SY5Y cells. TNF also disrupted lysosomal trafficking and membrane dynamics and induced lysosomal membrane permeabilization, followed by impaired autophagic clearance, defective mitochondrial turnover, reduced mitochondrial function, and neuronal death. Importantly, we demonstrated that AcNPs restored lysosomal, autophagic, and mitochondrial function, improved lysosomal membrane homeostasis, and rescued neuronal necroptosis in both TNF-treated SH-SY5Y cells and APPNL-G-F mice.

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This is an automated contradiction flag, not an editorial judgment on the preprint's quality. Flags identify where the preclinical literature and the clinical failure record diverge.