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Preprint WatchMildOctober 12th, 2026

Intracellular complement Factor B couples inflammatory sensing to metabolism, chromatin regulation and maladaptive tissue repair

Freiwald, T.; Chauss, D.; Tajmul, M.; Trujillo-Ochoa, J. L.; Kumar, D.; Ma, J.; Snyder, M.; Cheru, N.; Jaeger, J. F.; Zhuang, Y.; Gregor, J. B.; Ganne, G.; Wang, L.; Guo, Y.; Gunkel, M.; Huber, T.; Wiech, T.; West, E. E.; Ayyadevara, S.; Kolev, M.; Briggs, S.; Kemper, C.; Kazemian, M.; Portilla, D.; Afzali, B.

Myeloid IL-1 beta signaling through IL-1R1 on injured proximal tubule cells induces cell-intrinsic C3 and Factor B, where cytoplasmic Factor B drives cleavage-activation of intracellular C3 supporting mitochondrial adaptation, and nuclear Factor B binds chromatin and mediates histone H3 proteolysis.

Mild contradiction

1 prior failure

One documented clinical failure (Phase 1 or 2) overlaps with the claimed mechanism.

The single Claidex C3 entry is a Phase 3 pegcetacoplan programme in delayed graft function after deceased-donor kidney transplantation that ended in a sponsor-level decision rather than a negative efficacy readout (pegcetacoplan-c3-delayed-graft-function-phase3-strategic-reprioritization). This preprint is relevant to that programme's core assumption, because it locates a disease-relevant pool of C3 inside injured tubular cells, in the cytoplasm and nucleus, rather than in circulation. If the kidney-relevant complement activity is cell-intrinsic, a systemically administered C3 binder faces a compartment access problem that no dose adjustment resolves, and that is a hypothesis any successor programme should test before committing to a late-phase design.

Abstract excerpt

Inflammatory signals are broadly conserved, yet how tissue context converts them into programs of recovery or maladaptive repair remains unclear. Using kidney injury as a model of inflammation-to-repair transitions, we identify an injury-induced proximal-tubule complement program in which cell-intrinsic complement proteins are repurposed across subcellular compartments to couple inflammation to metabolic and chromatin regulation and promote maladaptive fibrotic remodeling. Mechanistically, myeloid-derived IL-1b; signals through IL-1R1 on injured tubular cells to recruit NF-kB and AP-1 to C3 and Cfb, coordinately inducing complement component 3 (C3) and Factor B (FB). Cytoplasmic FB drives cleavage-activation of cell-intrinsic C3, which supports tubular cell mitochondrial metabolic adaptation to stress and accumulation of C3aR-expressing macrophages around injured tubules. Nuclear FB, on the other hand, binds chromatin through a previously unrecognized DNA-binding interface and mediates histone H3 proteolysis and the preferential remodeling of chromatin promotors enriched in transcriptional programs relevant to maladaptive repair. Key features of this injury-associated C3-FB response, including intranuclear FB, are conserved in human kidney disease, associate with kidney dysfunction, and distinguish diseased from healthy kidneys. Together, these findings suggest that extracellular complement-targeting therapies may miss disease-relevant intracellular functions and suggest nuclear FB as a distinct target whose chromatin interaction and processing capacity could selectively limit maladaptive tissue responses beyond conventional inhibition.

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This is an automated contradiction flag, not an editorial judgment on the preprint's quality. Flags identify where the preclinical literature and the clinical failure record diverge.