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Preprint WatchStrongNovember 4th, 2026

Herboxidiene and EGFR expression in A172 glioblastoma cells

Naito, S.; Horita, Y.; Harada, H.; Mori, M.; Murata, Y.; Ohe, K.

SF3b inhibitors, which displace the U2 snRNP from the intron branch point, suppress EGFR expression by causing retention of EGFR intron 2.

Strong contradiction

3 prior failures

Three or more documented clinical failures match this mechanism, or a Phase 3 efficacy failure is on record.

A molecular biology preprint reports that herboxidiene and related SF3b splicing inhibitors suppress EGFR expression, extending to A172 glioblastoma cells a mechanism previously described in lung adenocarcinoma, where displacement of the U2 snRNP from the intron branch point causes retention of EGFR intron 2. The claim is that EGFR protein can be lowered by splicing interference rather than by occupying the kinase domain or the ectodomain. The Claidex graph holds three terminated EGFR programs, and two failed in ways a change of modality does not obviously fix. TAK-186 stopped for efficacy failure in EGFR-expressing advanced solid tumours (tak-186-mvc-101-egfr-cd3-cobra-solid-tumors-phase1-2-efficacy-failure), and [111In]-FPI-2107 stopped for translational mismatch in EGFR mutation-positive non-small cell lung cancer after dosimetry and uptake failed to support the intended therapeutic (fpi-2107-egfr-cmet-nsclc-dosimetry-uptake-failure), while BG-60366 was shut down by sponsor decision (bg-60366-egfr-cdac-nsclc-strategic-shutdown). Severity is strong because the failure count reaches three and the recorded archetypes include both efficacy failure and translational mismatch. The question the preprint does not address is whether lowering EGFR expression in a glioblastoma line predicts tumour control in patients, which is the step at which the prior EGFR programs failed.

Abstract excerpt

Glioblastoma carries a five-year survival of about 10%, and EGFR amplification is one of the molecular criteria that define the disease in the 2021 WHO classification of central nervous system tumours. SF3b inhibitors, which displace the U2 snRNP from the intron branch point, suppress EGFR expression in lung adenocarcinoma cells by causing retention of EGFR intron 2. We asked whether the same route operates in glioblastoma, using A172 cells, which express wild-type EGFR together with an in-frame tandem duplication of exons 18-26. Herboxidiene inhibited A172 proliferation: DMSO-treated cultures reached 2.32 times their day 0 reading by day 3 (SD 0.61), whereas every herboxidiene concentration from 0.125 to 1 M held the cultures at or below their starting value and differed from the vehicle on days 2 and 3 (Dunnett, p < 0.05). RT-PCR across EGFR exons 2-3 showed no intron 2-retained product at any concentration; instead the spliced product decreased relative to ACTB, to 0.43 of the vehicle value at 0.125 M, without deepening further up to 1 M. EGFR protein fell, but the two forms behaved differently: the 170 kDa wild-type band was no longer detectable from 0.13 M, whereas the 190 kDa duplicated form persisted at every concentration and declined only gradually, to 0.30 of the vehicle value at 1 M. RT-PCR of CDKN1B (p27) showed retention of introns 1 and 2 at 0.5 M in A172 and in A549 lung adenocarcinoma cells. In A172 cells, therefore, herboxidiene suppresses EGFR expression without the intron 2 retention seen in lung adenocarcinoma lines, and the growth inhibition is not accounted for by loss of EGFR alone. The proliferation data are the mean and SD of three series; the RT-PCR and western blot experiments were each performed once, without replicates or statistical testing, and should be read as preliminary.

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3 of 3 indexed

This is an automated contradiction flag, not an editorial judgment on the preprint's quality. Flags identify where the preclinical literature and the clinical failure record diverge.